Congratulations to Our Recent Graduates, Melody Malek and Mo Hashemian!

The David Lab is incredibly proud to celebrate the recent graduations of two outstanding researchers: Dr. Melody Malek and Dr. Mohammad (Mo) Hashemian!

Both Melody and Mo have been integral to our research and our lab community. While we will certainly miss their daily presence here at UC Davis, we are thrilled to watch them take their next big career steps. Impressively, both have headed south to begin postdoctoral positions at UC San Diego!

Dr. Melody Malek has officially joined the laboratory of Dr. Alexis Komor.

Dr. Mo Hashemian has officially joined the laboratory of Dr. Partho Ghosh.

We want to extend a massive congratulations to Melody and Mo for successfully defending their dissertations and for all their hard work. Thank you both for your dedication, your mentorship to others, and the fantastic science you’ve contributed to the David Lab.

We can’t wait to see all the amazing things you will accomplish at UCSD!

David Lab Featured in UC Davis Chemistry Spotlight: The Role of Fe-S Clusters in DNA Repair

 

We are thrilled to share that the David Lab has been featured in a recent UC Davis Chemistry Department Spotlight! The article, titled “DNA Repair Enzymes: To have an Fe-S cluster or not?”, highlights our ongoing research into the intricate roles that Fe-S clusters—cofactors typically found in redox enzymes—play in DNA repair mechanisms.

The spotlight showcases two of our lab’s recent breakthrough publications:

  • Uncovering the Molecular Basis of MUTYH Dysfunction: In a recent Nature Communications paper, we performed structural and functional profiling of inherited cancer-associated variants (CAVs) near the [4Fe-4S] cluster cofactor of the human DNA repair enzyme MUTYH. We discovered a critical allosteric network connecting DNA binding at the cofactor to damaged base removal at the active site. Our findings demonstrate that CAVs disrupt this network to thwart catalysis, providing a clear molecular basis for CAV dysfunction and offering new hypotheses on how oxidative stress impacts DNA repair.
  • Adapting to the Absence of a Cofactor: In collaboration with the Fisher Lab, we recently published a paper in Nucleic Acids Research detailing the structure and activity of “MutYX,” a rare “Fe-S clusterless” MutY from the anaerobic bacteria Eggerthella Sp. The structural findings reveal how this enzyme adapted to the absence of the highly conserved cofactor to maintain its DNA repair activity. Because it utilizes completely novel modes of DNA damage recognition, MutYX presents exciting new avenues for development as a biotechnology tool.

A huge congratulations to all our lab members and collaborators who contributed to these exciting discoveries!

Read the full spotlight on the UC Davis Chemistry News Page.

Read our recent publications here:

Nature Communications: https://doi.org/10.1038/s41467-025-58361-w

Nucleic Acids Research: https://doi.org/10.1093/nar/gkaf1127

 

Graduate Student Spotlight: Mo Hashemian

Graduate Student Spotlight: Mo Hashemian

This summer’s graduate student spotlight is on Mo Hashemian! Over the past year, Mo has accomplished numerous achievements. He was recently awarded the ARCS Fellowship (Achievement Rewards for College Scientists) for outstanding academics. At the Miller Symposium Poster Session, Mo received the poster award given out by ACS Pharmacology and Translational Sciences. We were also fortunate to hear about his research updates at both the third year seminar and joint group meeting, where Mo discussed the role of metal cofactors in MUTYH function and how he’s been adjusting the protein purification process to retain these cofactors within the structure. We’re excited to see the developments Mo makes on his project moving forward!

Mo presenting at the joint group meeting
Mo sharing his research at the Miller Symposium poster session

Thank you Carlos!

We bid farewell to our Postdoctoral Researcher, Carlos Trasviña-Arenas, as he begins his own lab in the Center for Research and Advanced Studies of the National Polytechnic Institute in Mexico City. His lab will be investigating DNA repair and chronic degenerative diseases. We thank Carlos for all his contributions to the MUTYH project, and wish him the best of luck in Mexico!

 

Congratulations to Dr. Merve Demir!

A big belated congratulations to Dr. Merve Demir on filing her dissertation! Her research has helped further our understanding of the mechanisms and structures involved in MutY’s identification of the OG lesion and the excision of the misincorporated adenine. We wish her the best of luck as she continues her research adventures as a Postdoctoral Associate at the Conrad Prebys Center at SBP!

 

Dr. Demir’s Bell Ringing Ceremony
Continuing our tradition of hand-printing the wall!

Congratulations to Professor Sheila David on Receiving the 2022 Education Award

Congratulations to Professor Sheila David on Receiving the 2022 Education Award

10/12/2022

Professor David receives the 2022 Education Award by the Environmental Mutagenesis and Genomics Society (EMGS). The EMGS recognizes her contributions to educating students and young investigators in environmental mutagenesis and genomics. Professor David continues to dedicate her time to mentor and teach both undergraduate and graduate students in the field.

“Professor Sheila David receives the 2022 Education Award from the Environmental Mutagenesis and Genomics Society”

Once again, congratulations to Professor David!

Graduate Student Spotlight: Elizabeth Lotsof

Graduate Student Spotlight: Elizabeth Lotsof

11/1/2021

Meet Elizabeth Lotsof, a Graduate Student in Sheila David’s lab at UC Davis in the Department of Chemistry seeking to earn her Ph.D. in Chemistry. Liz focuses on DNA repair enzyme NEIL in her research. Liz is also a mentor to undergraduate researchers, a reliable teammate, and has made significant contributions to the Department of Chemistry at UC Davis through her mentorship, outreach, and dedication to peer graduate students.

Watch this video to learn about her work, about who she looks up to in science, how her graduate study has helped shape her future, and more!

 

https://youtu.be/C1jm1UYbtq8

 

 

Liz’s Bio on the David Lab Website:

Elizabeth Rose Lotsof

The David Lab Website:
https://davidlab.ucdavis.edu/

#elizabethlotsof #chemistry #dna #ucdavis #graduate #graduateschool #neil #dnarepair #davidlab #thedavidlab #sheiladavid #undergraduateresearch #mentorship #womeninscience #lizlotsof #ucdchemistry #chemicalbiology

Congratulations to our students!!

Many congratulations to our graduate students!

Elizabeth Lotsof won the Raymon M. Keefer Fellowship which is awarded to graduate students pursing a Ph.D. in Chemistry.

Cindy Khuu won the Floyd and Mary Schwall Dissertation Year Fellowship in Medical Research which is awarded to continuing graduate students focused on medically related research.

 

Congratulations to our undergraduates!

Vivian Kellner won both the Maureen Belletini Undergraduate Research Fellowship which is awarded to continuing juniors or seniors and the Francesca Miller Undergraduate Summer Research Fellowship which is awarded to a junior or senior undergraduate pursing research in the biomedical or pharmaceutical science. Vivian participated in the annual R. Bryan Miller Symposium which was a requirement for the Francesca Miller Fellowship.

Madeline Bright was named the 2021 University Medalist, this highly prestigious award is given to the top graduating senior at UC Davis for their studies, contributions to community service, and aspirations to their future goals. UC Davis published a news article about Madeline that can be read here: https://www.ucdavis.edu/news/questions-drive-top-uc-davis-graduate

 

We are so proud of all of our students!!

Recent Article Published: Unique H-bonding of Adenine with oxidatively damaged base 8-oxoguanosine enables specific recognition and repair by DNA glycosylase MutY.

Recent Article Published by Sheila David’s Lab: Unique Hydrogen Bonding of Adenine with the Oxidatively Damaged Base 8-Oxoguanine Enables Specific Recognition and Repair by DNA Glycosylase MutY.

Majumdar, C.; Mckibbin, P.L.; Krajewski, A.E.; Manlove, A.H.; Lee, J.K.; David, S.S.
J. Am. Soc. 2020. 142, 48, 20340–20350.

      DNA repair protein MutY employs specific interactions to differentiate OG:A basepairs from canonical G:C and T:A basepairs. Prior work from our lab has focused on understanding the structural requirements of OG on lesion recognition and catalysis, and we have shown that MutY relies on the exocyclic 2-amino group of OG to identify and distinguish OG:A from other basepairs. Additionally, we’ve shown that OG binding induces conformational changes that influence A excision.

     This new work uses structure-activity relationships (SARs) to identify the structural features of A that influence OG:A recognition, verification, base excision, and overall cellular repair. We correlate observed in vitro MutY activity on A analogue substrates with their experimental and calculated acidities to provide mechanistic insight into the factors influencing MutY base excision efficiency. Our results herein can be used to guide future design of MutY/MUTYH specific probes to monitor the activity, or lack thereof, of MutY/MUTYH variants. These results can also applied toward the development of MUTY/MUTYH specific inhibitors that may find utility in cancer therapeutics.

Click on the link or graphical abstract to find out more!

https://pubs.acs.org/doi/abs/10.1021/jacs.0c06767#